Lab Members

Our research in computational biology involves functional annotation of genomes, creation of knowledge-bases, comparative genomics, study of signalling pathways,drug targets identification and lead molecule optimization for various diseases.

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Students successfully completed their project work ( M.Tech / Ph.D. thesis):

45. Boggavarapu RSS Srinivas Gupta – M.Tech thesis
Thesis Title: A tool for Motif Based Functional Annotation of Enzymes

44. Priyanka Tiwari – M.Tech thesis
Thesis Title: Identification of Gene Regulatory Elements

43. Aishwarya Pandey – M.Tech thesis
Thesis Title: Prediction and Analysis of Breast cancer Data using Machine Learning Approaches

42. Ashish Kumar Singh – M.Tech thesis
Thesis Title: Electrocardiogram-based Real-Time driver drowsiness detection.

41. Eashwer Ram B (2019)– M.Tech thesis
Thesis Title: Prediction of ligand binding sites in proteins using a structure-based method.

40. Imram Beg (2019)– M.Tech thesis
Thesis Title: A geometrical grid-based approach to predict ligand-binding sites and functional characterization of proteins.

39. Rakesh Rajan (2019)– M.Tech Thesis
Thesis Title: Drowsiness detection through eye monitoring

38. Jeevan Sai (2019)– M.Tech thesis
Thesis Title: Biocircuit, a user-friendly workflow designer

37. Parnav Pandey (2019)– M.Tech thesis
Thesis Title: Adverse drug reactions and drug-target prediction using machine learning techniques.

36. Darshna (2019)– M.Tech thesis
Thesis Title: An entropy distribution based classifier to predict subcellular locations of human proteins.

35. Sanghpriya (2019)– M.Tech thesis
Thesis Title: A branch and bound approach to tackle the problem of de novo genome assembly.

34. Anupam Vishwakarma (2019)– M.Tech thesis
Thesis Title: Predicting human olfactory perception from molecular descriptor using a machine learning approach.

33. Rashmi Tripathi (2019)– Ph.D. thesis
Thesis Title: Investigating the lncRNA mediated target regulations associated with apoptosis of cancer using RNA-Sequencing data: special focus on breast carcinoma.

32. Saurabh Gupta (2018)– Ph.D. thesis
Thesis Title: Study of Abiotic Stress Tolerance in Cereal Crops using System Genomics Approaches.

31. Aqsa Javed (2018) – M.Tech thesis
Thesis Title: PocketSearch- A Hadoop based approach to predict protein-ligand binding

30. Ritu Jaiswal (2018) – M.Tech thesis
Thesis Title: Protein Motif Discovery Tool

29. Alokita Jaiswal (2018) – M.Tech thesis
Thesis Title: SPARC, A potential Target for Pancreatic Cancer

28. Sher Mohammad Khan (2018) – M.Tech thesis
Thesis Title: Finding Novel Targets in Oral Cancer using NGS Data

27. Utkarsh Raj (2018) – Ph.D. thesis
Thesis Title: Targeting Cancer Epigenetic Regulators involved in Histone Modifications

26. Mausami Mondal (2017) – M.Tech thesis
Thesis Title: An Entropy-Based Classification of Breast Cancer genes using Microarray Data

25. Bhusan Jain (2017) – M.Tech thesis
Thesis Title: Drug Target Network

24. Nimisha Roy (2017) – M.Tech thesis
Thesis Title: Cancer Epigenetic Network Analysis Using Graph Theory

23. Anjali Nayak (2017) – M.Tech thesis
Thesis Title: Infections associated with Biologic Therapy: a clinical Meta-analysis study

22. Prashant Kumar (2017) – M.Tech thesis
Thesis Title: Decoding the differential methylation patterns in Ovarian Cancer using NGS data analysis

21. Imlimaong Aier (2016) – M.Tech thesis
Thesis Title: Structural Insights into Conformational Stability of both Wild-Type and Mutant-Type EZH2 Receptor

20. Manju Kumari (2016) – M.Tech thesis
Thesis Title: Identification of small non-coding RNAs in maize responding to phosphate deficiency: A Genome-wide Analysis

19. Himanshu Kumar (2016) – Ph. D. thesis
Thesis Title: Systems Biology approach to study Chronic Myeloid Leukemia, a stem cell’s disorder

18. Sunil Patel (2015) – M.Tech thesis
Thesis Title: DeepInteract: Deep Neural Network-based Protein-Protein Interactions prediction tool

17. Swapnil Tichkule (2015) – M.Tech thesis
Thesis Title: Mathematical Modelling and Systems Biology approach for the simulation of IL-6 induced signaling pathway

16. Vandana (2015) – M.Tech thesis
Thesis Title: DUSR (Distributed Ultrafast Shape Recognition): Hadoop based tool to identify similarly shaped compounds

15. Yashbir Singh (2015) – M.Tech thesis
Thesis Title: Functional annotation and Active site prediction of conserved Hypothetical proteins from Triticum aestivum (Bread Wheat)

14. Yashasvi Jain (2015) – M.Tech thesis
Thesis Title: In silico identification of glucagon receptor antagonist for the treatment of type 2 diabetes mellitus

13. Abhishek Singh Chauhan (2012) – M.Tech thesis
Thesis Title: ADME prediction by statistical learning

12. Anubhav Saxena (2012) – M.Tech thesis
Thesis Title: Annotation of the human genomic sequence by combining existing gene prediction tools using hybrid approach

11. Jyoti (2012) – M.Tech thesis
Thesis Title: Prediction of N-Glycosystem sites in non -glycon sequon proteins

10. Nitesh Jain (2012) – M.Tech thesis
Thesis Title: Lexical analysis for the measurement of conceptual duplicity between C programs

9. Swati Patel (2012) – M.Tech thesis
Thesis Title: To calculate the rupture force between biotin and streptavidin using molecular dynamics simulation

8. Himanshu Kumar (2011) – M.Tech thesis
Thesis Title: Determination of protein-protein Interaction through Machine Learning Approach

7. Swati Srivastava (2011) – M.Tech thesis
Thesis Title: Prediction of Drug Intestinal Absorption through Machine Learning Approach

6. Renesh H. Bedre (2011) – M.Tech thesis
Thesis Title: A New Information Based Numerical Representation of DNA for the Detection of Gene using Digital Signal Processing (DSP) Approach

5. Anju Sharma (2010) – M.Tech thesis
Thesis Title: Prediction of Ligand Toxicity

4. Arun Chauhan (2010) – M.Tech thesis
Thesis Title: ProtSeqFunc: a tool for automatic molecular functional annotation of protein in Eukaryotes

3. Rajnish Kumar (2010) – M.Tech thesis
Thesis Title: Prediction of oral bioavailability of drugs using a machine learning approach (SVM)

2. Bhumika Arora (2009) – M.Tech thesis
Thesis Title: Prediction of Exon-Intron boundaries using machine learning

1. Pooja Gupta (2009) – M.Tech thesis
Thesis Title: Prediction of blood-brain barrier permeation in the drug database by using SVM and cheminformatics approaches